PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678333437
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family SRS
Protein Properties Length: 196aa    MW: 22068.9 Da    PI: 9.3376
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678333437genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7021333.1e-41741924150
     DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelets 103
                ++++CqdCGnqakkdC+h+RCRtCC++rgf+C thvkstWvpaakrrer++ql+    +       + + rkr+                  +++e e  
  678333437  74 TKINCQDCGNQAKKDCVHMRCRTCCRNRGFQCPTHVKSTWVPAAKRRERHEQLQRRDPTP------EVATRKRQR----------------ANPSEPENG 151
                6789*********************************************88887643322......222222221................223344567 PP

     DUF702 104 slPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydq 150
                ++P+ev ++a fr+vrv+      +e+aY+++v igGhvfkG++++q
  678333437 152 RFPSEVTATAAFRSVRVR------DEYAYEAVVRIGGHVFKGTIFHQ 192
                8***************96......8*****************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.4E-4175192IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.4E-2677119IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.1E-12152192IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MAAGFFALGG VGDVAGGGAA MAPEMNLESW LLYRNEANDL PYKGFEPWGR QPMGVSFDRR  60
QSPVLEPYKL GDETKINCQD CGNQAKKDCV HMRCRTCCRN RGFQCPTHVK STWVPAAKRR  120
ERHEQLQRRD PTPEVATRKR QRANPSEPEN GRFPSEVTAT AAFRSVRVRD EYAYEAVVRI  180
GGHVFKGTIF HQHTAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571710.12e-48PREDICTED: protein SHI RELATED SEQUENCE 1-like
SwissprotQ9SD409e-41SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
SwissprotQ9XGX04e-41SHI_ARATH; Protein SHORT INTERNODES
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.13e-42Lateral root primordium (LRP) protein-related